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Spectral Line Observing
5.1 Startup ChecklistOnce the scientific goals of the observing session are clearly in mind, you must decide upon the equipment and observing techniques to be used. The decisions to be made and the options are listed below. Sideband Choice: For double sideband observations, care must be taken in choosing the placement of the image sideband Spectrometer Configuration: Filter bank spectrometers with several different resolutions are available. The observer must choose which to use and how they should be configured (the parallel or series option). The Millimeter Autocorrelator (MAC), which has numerous resolution and bandwidth options, is also available. Observing Mode: Choices are:
Observing Time Budget: Prior to the start of observations, you should make a rough budget of observing time requirements. In addition to the integration time on the program sources, you should allow time for “overhead” items such as telescope movement, and pointing and calibration tests. Before beginning program observations, check the telescope pointing and focus. A few observations of test sources are also advisable. These observations are discussed in Chapters 2, 4, and 6.
5.2 Sideband ChoiceAll of the 12m receivers operate by default in a single sideband (SSB) mode and require upper sideband (USB) operation. For the 2 and 3mm receivers, it is possible to observe DSB. Equipment constraints, such as the tuning range of the local oscillator or the receiver, may sometimes determine the sideband used in DSB mode. Other times, the presence of telluric lines steer the choice (see Figure 6.1). When using DSB mode, make the sideband choice with care. The primary things to watch out for when choosing the sideband configuration for a DSB measurement is the presence of “contaminating” lines from the image sideband. Consult a good tabulation of spectral lines such as the Lovas Catalog (F. J. Lovas, J. Phys. Chem. Ref. Data, 15, 251, 1986) to see what spectral lines are present in both the signal and image sidebands. If an image line is too close to the program line in the signal sideband, a small local oscillator shift will usually cure the problem (the frequency axes run oppositely for the upper and lower sidebands). One can also make small adjustments in the IF to change the placement of lines from the two sidebands. Sometimes, lines from the image sideband can be used to advantage for calibrations or system checks. With a slight rearrangement of Equation 3.4, we can write the expression for the sky frequency as a function of the LO frequency settings where fsyn is the synthesizer frequency, fsky is the sky frequency of the emission (the rest frequency with Doppler corrections), j = +1 for lower sideband and 1 for upper sideband, fIF is the IF frequency (1.5 GHz by default), m is the factor by which the LO frequency is multiplied before injection into the mixer, flock is the phase lock loop offset frequency (100 MHz), and N is the synthesizer harmonic. The Doppler correction is determined by the choice of velocity type (see Chapter 4).
where vobject and vantenna are the object and antenna velocities relative to the local standard of rest and c is the speed of light.
5.3 SpectrometersTwo spectrometer systems are available at the 12m: a suite of analog filter banks and a Millimeter Autocorrelator (MAC), which is a digital correlation spectrometer.
5.3.1 Filter BanksMost of the analog filter banks have 256 channels each. The filters are integrated, multiplexed, and recorded by the control computer every 100 milliseconds. A total of 512 channels can be recorded at a time, which means that two filter banks can be used for each scan. The filter spectrometers available and the ways in which they can be configured are described below. Table 5.1 lists the characteristics of the 12m filter banks
5.3.1.1 The Parallel/Series OptionMost of the 256 channel filter banks can be split into two 128 channel sections that can be fed with independent IF signals. When a filter bank is split into two sections, the bank is said to be in a parallel configuration. Each polarization channel of the receiver feeds half of a filter bank in this configuration. The advantage of this mode is that the two halves of the filter bank can be averaged to produce improved signal-to-noise in the final spectrum. The disadvantage of this mode is that the total bandwidth is cut in half. Observers of narrow Galactic lines typically choose the parallel option, and use two filter banks with different resolutions. Observations that require larger bandwidths, such as CO from other galaxies, usually choose the series mode. In the series mode, the two filter bank halves are used end-to-end to analyze a single input IF signal. A typical observing mode might be to use one of the 1 MHz filter banks for polarization 1 and the other for polarization 2. The two banks can be averaged in software to improve the signal-to-noise of the final spectrum. Figure 5.1 is a diagram showing how the parallel/series option works.
5.3.1.2 Bad Channel EliminationAt times, certain channels in the filter banks are defective. You can identify these “bad” channels by examining the output of a vane calibration cycle, which is called the gains. Vane calibration is described in detail in §5.6.1. Bad filter channels usually appear as spikes in the gains and will often cause scaling problems in the final spectrum if not eliminated. You can display the gains with the line data reduction program. To find the bad channels, perform a calibration scan and type g1 to display the first filter bank and g2 to display the second bank. If bad channels exist, type the command badch. You will be asked to enter the number of bad channels. After doing so, the crosshairs will appear on the screen. Move the vertical crosshair to each bad channel and select any mouse button. When all the bad channels have been entered, the program will give a report of the channel numbers.
Table 5.1: 12m Filter Bank Characteristics
Give these numbers to the operator. Up to 16 bad channels can be eliminated, but rarely more than 5 channels out of 512 will be bad. It is also possible to eliminate blocks of 16 channels, but this is seldom necessary. If blocks of 16 channels are bad, notify the Friend of the Telescope. Once the operator has entered the bad channels, he will perform another vane calibration cycle to set the bad channels to 1.0 x 10-20, which is the flagged channel value. On all subsequent spectra, those channels will be flagged. These bad channels can be eliminated in reduction software by using the replace command (see the line manual).
5.3.1.3 Frequency OffsetsGiven the broad-band tunability of the 12m receivers, one can shift the rest frequency measured by the filter banks by specifying a frequency offset to be added to the rest frequency. Offsets as large as the entire bandwidth of the receiver (±300 MHz) are possible. Filter bank offsetting is most often used in conjunction with the 4IF Millimeter Autocorrelator (MAC) mode (see §5.3.2.1 for further information).
5.3.2 Millimeter AutocorrelatorThe Millimeter Autocorrelator (MAC) offers a number of bandwidth and resolution modes, listed in Table 5.2. Most general single-beam dual-polarization measurements are done using the configurations with 2 IF's. The 8 IF modes are designed for use with the 1mm Array receiver. The 4IF Millimeter Autocorrelator (MAC) mode is a special-purpose observing mode allowing the measurement of two frequencies each at two polarizations simultaneously.
5.3.2.1 The 4IF Observing ModeOne of the more efficient observing modes available at the 12m involves the use of the 4IF configuration of the Millimeter Autocorrelator (MAC) in conjunction with the frequency offsetting capabilities of the filter banks. Within the IF modules which feed the receiver signals to the Millimeter Autocorrelator (MAC) there are oscillators which can shift the input receiver signals by ±300 MHz in 5 MHz steps. Since these oscillators are independent of the Fluke synthesizers which provide the frequency offsetting capabilities of the filter banks, it is possible to measure spectra at three separate frequencies within the 600 MHz bandwidth of the receiver (assuming both mixers are tuned to the same frequency). A graphical description of this mode is shown in Figure 5.2. To given a practical example, say I want to simultaneously measure the H2CO emission from the 303->202 and 322->221 transitions at 218222.192 and 218475.632 MHz, respectively. These two frequencies are separated by 253.440 MHz, which would restrict my choice of backends to the 2MHz filter banks in parallel and the 600 MHz Millimeter Autocorrelator (MAC) mode. Since I want to look at galactic sources with narrow lines, this wide-band modes are not acceptable. To use the 4IF mode to measure both transitions simultaneously, I would
Table 5.2: Millimeter Autocorrelator (MAC) Configurations
All values in this table refer to each IF. Modes tagged with a * are produced by dropping the last half of the lags.
5.4 Observing ModesThere are six primary spectral line observing modes are available at the 12m. The attributes and applications of each are described in detail below. Signal processing and calibration for each mode are described in §5.6.
5.4.1 Total Power ONs and OFFsTwo observing procedures, called tpon and tpoff, are available for recording total power spectral line scans. The two procedures are identical, except that tpon tracks the ON (source) position and tpoff tracks the OFF (reference) position. You must execute the procedures manually, one scan at a time. As such, these procedures are mainly used for diagnostic purposes. To use tpoff and tpon, follow this prescription:
Line> scan# f Line> scan# s
Line> install ton Line> scan# ton
5.4.2 Position SwitchingPosition switching, called the PS mode, is the most common and reliable observing mode at the 12m for general spectral line observations. It involves considerable overhead in telescope movement and requires that equal time be spent in the ON and OFF source positions, but the data quality is usually good. In this mode, the telescope moves between the ON position and a relative OFF position, which may be specified in either azimuth and elevation, or right ascension and declination offsets. Usually the offset is in azimuth, so that the ON and OFF positions are taken at about the same airmass. The best rejection of the atmosphere and the best spectral baselines are achieved with small angular switches. Choose the smallest switch possible, so long as you are confident that the OFF position is free of source emission. PS data recorded on disk is a final spectrum formed from the ratio (ON – OFF)/OFF, where the ON and OFF data are total power samples. In contrast to the total power observing modes TPON and TPOFF, the ON and OFF samples are not saved as separate scans for independent processing. Although the PS mode offers less flexibility in processing data than do the total power modes, it also reduces the total volume of data and makes processing easier. To reduce telescope movement and provide the best compensation for polynomial drifts in atmospheric emission, choose the number of OFF – ON pairs to be a multiple of 2. The observing cycle will then be repeats of an OFF – ON – ON – OFF pattern characterized by a Walsh function (see Appendix E). Each ON or OFF is called a sample and each OFF – ON pair is called a repeat. The observer must tell the operator how long to integrate for each sample (the default is 30 seconds) and how many repeats per scan, or alternatively, the total length of the scan in minutes. A typical scan might be 6 minutes long, with 30 second samples (meaning 6 repeats). You can, of course, vary the length of the scan to suit your own needs. Each ON – OFF pair can be edited individually with the line program (see Record Editing in the supplement to the line manual). The operator can issue the command to take scans one at a time, or can set the system into an automatic data-taking loop. Figure 5.3 shows an example of a spectrum produced by a PS scan. The parameters of a PS scan that you must give to the operator are
5.4.3 Absolute Position SwitchingAbsolute position switching, called the APS mode, is useful when observing in complex emission regions where it is difficult to find an emission-free reference position. In such cases, position switching with (AZ, EL) offsets can be dangerous because rotation of the parallactic angle as the source is tracked across the sky may cause emission to rotate into the reference beam. You will want to search for an emission-free position as close to the source position as possible, and use this as the reference position. If you wish, you can compute the (RA, DEC) offsets to this position and use ordinary position switching. Most observers find it most convenient, particularly for future observations, to enter the absolute (RA, DEC) coordinates of the reference position and use the absolute position switching observing mode. APS is identical to ordinary position switching except that the switching is done between two positions absolutely specified by their celestial coordinates. The reference (OFF) position should be given a different name from the signal (ON) position and is best placed in a different source catalog from the signal position. Data taking and calibration options are the same as for ordinary position switching. The parameters of an APS scan that you must give to the operator are
5.4.4 Frequency SwitchingThe frequency switching observing mode has two primary uses: to
increase the on-source integration time through “in-band” switching and to
alleviate the problem of finding an emission-free reference position when
observing in a (spatially) complex emission region. It also entails less system
overhead than most other observing modes. In this mode, called an FS
observation, a reference spectrum is obtained by shifting the center frequency
of the signal spectrum. In principle, this can be done by switching the
frequency of the LO or an IF oscillator; at the 12m, the former is generally
used. If the frequency shift is small enough, the spectral line will appear in
both the signal and reference spectra. When the resultant spectrum is formed,
the line will appear twice, once in emission and once in absorption. The
spectrum can be “folded” to obtain a
The primary drawback of frequency switching is that the spectral baselines are generally not as good (i.e. flat) as with position or beam switching. This is because the two frequency positions each have their own spectral bandpass shapes which do not cancel in the computation of the final spectrum, which leaves a residual standing wave in the overlapped spectrum. We have nearly eliminated this standing wave by using two techniques:
If the lines are narrow and the frequency shift is small (say < ±40 MHz), good results can often be obtained. One must also be careful when frequency switching in regions (spatial or spectral) which may contain multiple spectral lines. Note that one common contaminant in a frequency switched observation is mesospheric CO. The CO J=1->0 emission from the mesosphere is rather weak, but CO J=2->1 emission is quite strong (see Figure 5.5). Frequency switching is effected by switching the phase lock loop offset frequency (the Lock IF) between two nearby settings, usually generated by separate oscillators. The oscillator settings must be set manually. The frequency of switching is usually 5 Hz and is generated by the spectral line multiplexer when so instructed by the computer. The phase lock circuitry must be able to lock at both the signal and reference frequencies. This places a practical limit on the magnitude of the shift of typically < ±40 MHz. Some receiver systems use the fundamental frequency of the Gunn oscillator as the LO frequency. For these systems, a shift in the loop offset frequency will produce exactly the same shift in the spectrum. Other receiver systems, particularly the high frequency receivers, use a harmonic multiple of the oscillator source as the LO frequency. The desired frequency shift must be divided by the appropriate multiple before setting the loop offset frequencies. You will usually want to know whether the reference frequency is higher or lower than the signal frequency, or in other words, where the apparent “absorption” and “emission” features appear in the band. This is dependent upon which sideband (upper or lower) is being used. For upper sideband operation, the signal frequency will be higher than the reference frequency, so that the emission line will appear to the right of the reference signal in spectra. The reverse is true for lower sideband operation. When performing frequency switched observations, you must decide upon the following parameters and give them to the operator:
To reduce “in-band” frequency switched data in the line
data reduction system, use the fold
command.
5.4.5 Beam SwitchingSpectral line beam switching can be useful when observing small angular diameter sources and when the best possible baselines are needed. This observing mode involves the nutation (chopping) of the subreflector and a positional movement of the telescope and is thus called the BSP (beam switching plus position switching) mode. The technique is much the same as that used for continuum ON/OFF's (see §6.4.1.1 and Figure 6.2). With the subreflector nutating at a rate of typically 1.25 Hz, the telescope is moved to place the source first in one of the beam positions and then in the other. The beam position which, for a positive source signal, produces a positive response in the spectrometer is called the “positive beam” and a sample taken in this position is called an “ON”. Conversely, the beam position which produces a negative response in the spectrometer is called the “negative beam” and a sample taken there is an “OFF”. A BSP scan always consists of four samples taken in the order OFF – ON – ON – OFF. The samples are taken in this order to get the best atmospheric rejection, the best baselines, and to reduce telescope movement. The integration time of one of the individual ON or OFF samples controls the total integration time of the scan (sample length times 4). The beam switching mode usually produces very good spectral baselines. The subreflector switch rate is such that atmospheric changes and filter bank anomalies are most often subtracted out. The primary restriction for beam switching is that the source angular diameter must be smaller than the subreflector throw. The subreflector throw can be varied between 0 and ±4.5', but beam throws larger than ±3 arcminutes are inefficient. The default switching rate is 1.25 Hz. Switch rates of 2.5 and 5.0 Hz are also available. The observing efficiencies are poorer at the faster rates but the cancellation of atmospheric drifts may be better. You must decide upon the following parameters in a beam switched observation and give them to the operator:
5.4.6 MappingThe 12m system offers three modes of spectral line mapping: mapping by manual offsets, automatic mapping of rectangular grids or catalogs in either the total power (TPM), position-switched (PSM or APM), or frequency-switched (FSM) modes, and On-The-Fly mapping. Mapping with manual offsets or rectangular grids is appropriate for small maps or maps with unevenly spaced points. For most rectangular grid mapping, we recommend the automatic position-switched total power mode. With the total power mode, you can choose to observe several ONs per OFF and thereby increase your observing efficiency. On-the-Fly mapping is discussed in the separate manual On The Fly Observing at the 12m. In the following we describe each of the mapping modes.
5.4.6.1 Manual OffsetsOften an observer will want to make a simple source map consisting of only a few points. In such cases, manual offsets (in RA, DEC) from the center position are the easiest way to proceed. Follow these steps:
The header information on the spectrum displayed by the line data reduction program will show any offsets that have been entered. The offsets are given in (real) angular units.
5.4.6.2 Grid MappingIn the grid mapping modes, you can define a rectangular (RA, DEC) or (lII, bII) grid with different grid spacing in the horizontal and vertical coordinates. You can also define a grid to be acquired at an arbitrary rotation angle. The number of rows and columns must be an odd number. In the total power (TPM) and position-switched modes, you can choose between absolute (Absolute Position Mapping, or APM) and relative reference position (Position Switched Mapping, or PSM) measurements, you can choose to observe several map positions (ONs) for each reference (OFF) position, and you can observe several OFFs for each vane calibration scan. Frequency switched mapping (FSM) requires no OFF position measurement. Grid maps can be observed in three different ways: standard grid, which measures all positions on the grid sequentially, spiral grid, which measures all positions on the grid with a spiral pattern, and cross grid, which measures only the points which lie on the central row and column of the grid. Figure 5.6 shows the observing sequence for each variety of grid map. After defining the grid, you can choose to map a subset by specifying the beginning and ending row numbers, and the beginning and ending column numbers. To use any of the spectral line grid mapping modes, give the operator the following information:
Display of position- and frequency-switched map measurements is the same as that used to display regular PS or FS measurements. The spectrum of a single total power map point is displayed in line using the ton procedure: Line> install ton Line> scan# ton where scan# is that of the ON position. To display a contour map of peak or integrated intensity versus position, it is best to use the CLASS program. See §2.4.1 for information on how to port your 12m data to CLASS format. Manuals for the CLASS program are also available.
5.4.6.3 When Should I OTF Instead of Grid Map?As a general rule-of-thumb, it is best to use OTF mapping instead of the step-and-integrate mapping described in this section when your map field is larger than about 60 in either RA or DEC and your target spectral line is expected to be reasonably strong. For those rare cases when OTF is not suitable, one must decide which step-and-integrate mapping technique to use. There is no hard rule to determine whether one should use PSM or TPM, the total power mapping mode. TPM is more efficient in the sense that you can use one OFF scan with several ONs. However, PSM may produce better baselines because of the switching pattern. As a general recommendation, we suggest that you use TPM for maps of strong lines and large mapping grids; use PSM if the lines are weak and baseline stability is critical. APM is also an alternative to PSM: it uses the same OFF –ON – ON – OFF... pattern but the mapping positions are taken from discrete catalog entries rather than a grid built from offsets from a single central position. FSM is another alternative for those cases where frequency switching can be used (see §5.4.4).
5.4.6.4 An Important Note About Spatial SamplingThe following is due to Darrel Emerson When setting up your map observations, it is
important to keep in mind the following facts about sampling and aliasing in
radio astronomical mapping data. If you want to represent the full resolution of
the telescope, you have to sample the data often enough to represent all the
spatial frequencies detected by the dish. You can think of the extreme edges of
the dish of diameter D as part of an interferometer of spacing D, which has to
be sampled at It's useful to consider what happens if you
undersample data. Assume that the undersampling happens on the sky, rather than
in later in the data processing. Suppose you have a 10m dish, but you only
sample at That means that the spatial frequencies
present from the dish baselines of 8m to 10m get reflected back into the spatial
frequencies of 8m down to 6m. Not only have spatial frequencies from the 8m to
10m baselines been lost, but valid spatial frequencies from baselines of 6m to
8m have been corrupted. You can't tell if structure in your map with a spatial
wavelength of How important this undersampling is depends on
exactly what the illumination taper is, how important it is that you retain the
maximum possible resolution of the telescope, how good a dynamic range you want
in the observations, and at some level how much fine scale structure there is in
the source itself. If you only sample at 0.8 Nyquist (e.g.
This is one circumstance where it is perfectly rigorous to under sample the data. If, say, you have a 10m dish, and you are taking data to compare with other observations using a 1m dish at the same wavelength (or the equivalent number of wavelengths at some other frequency) then you only need to | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||